Example of a LRC-TriCEPS experiment
Case study Dualsystems Biotech AG and Biaffin GmbH & Co KG
Example of a LRC-TriCEPS™ (CaptiRec) experiment performed at Dualsystems to identify the target receptor of Anti-EGFR-Antibody on human breast cancer cells (MDA-MB-231):
Positive control ligand (included in the kit): Insulin
Ligand of interest: Anti-human EGF receptor antibody (mouse mAb, clone 225, SIGMA-ALDRICH #E2156)
Cells: MDA-MB-231 human breast cancer cells
Quality control 1: Expression of human epidermal growth factor receptor (EGFR) in human breast cancer cells (MDA-MB-231) was monitored by FACS using primary labeled Anti-EGFR antibodies (green) with the corresponding isotype control antibodies (grey).
Quality control 2: Expression of Insulin receptor (INSR)and Insulin-likegrowth factor 1 receptor (IGF-1R) in human breast cancer cells (MDA-MB-231) cells were monitored by FACS using primary labeled Anti-IGF1R antibodies (orange) and Anti-INSR antibodies (blue) with the corresponding isotype control antibodies (grey).
Quality control 3: Dot Blot to monitor coupling of ligands to TriCEPS. Detection by Streptavidin-HRP (horseradish peroxidase) that binds to the biotin part of TriCEPS. TriCEPS itself does not bind to the nitrocellulose (see glycine control).
Upper lane: positive control Insulin coupled to TriCEPS
Middle lane: ligand of interest (anti-EGFR antibody) coupled to TriCEPS
Lower lane: negative control for the dot blot, glycine coupled to TriCEPS
Dilutions as indicated in the figure.
Volcano Plot on protein level.
CaptiRec experiment with anti-EGFR antibody (mouse mAb, clone 225, SIGMA-ALDRICH #E2156) and Insulin on MDA-MB-231 human breast cancer cells in triplicates. The receptor candidate space is defined by an enrichment factor of > 2-4 fold and statistical significance (FDR-adjusted p-value<0.01).
Surface Plasmon Resonance (SPR, BiacoreTM) analysis performed by Biaffin GmbH & Co KG to determine the affinity of the anti EGFR-antibody used in the above experiment. Human EGFR monomers were immobilized on the chip and the anti EGFR-antibody was used at a concentration range of 46pM bis 100nM. Affinity (KD) of the antibody to the EGFR is 0.2nM.
In process positive control: Insulin Receptor (INSR) and Insulin-like growthfactor 1 receptor (IGF-1R) were detected as the target of insulin on the living human breast cancer cells (MDA-MB-231) on the peptide level. INSR was identified as the target receptor for insulin on the protein level on MDA-MB-231 cells. EGF-receptor was identified as the target of the anti-EGFR receptor antibody on the living human breast cancer cells (MDA-MB-231). As expected, the ligand itself IgG (Immunglobulin G) is also in the receptor space since anti-EGFR antibody is glycosylated.