Integrated prediction tools |
|
| MyHits server |
|
BLAST searches | |
| Nucleotide BLAST (BLASTN) at NCBI |
| Protein BLAST (BLASTP) at NCBI |
| Translated query against Protein BLAST (BLASTX) at NCBI |
|
Signal sequence and topology prediction tools | |
Prediction of sorting signals | PSORT |
Prediction of cleavable N-terminal signal sequences | SignalIP Server |
Prediction of propeptide cleavage sites | ProP |
Prediction of mitochondrial targeting sequences | MITOPROT |
| Predotar |
| |
Topology prediction programs | HMMTOP Server |
| SOSUI Server |
| TMHMM |
| TopPred |
| |
Prediction of subcellular localization | PSort |
| TargetP |
| LocTree |
| |
Prediction of nuclear localization signals | PredictNLS |
|
|
Pattern and domain prediction | |
| Prediction of protein domains, patterns and sites at InterProScan |
| Search for repeats in a protein sequence |
| De novo repeat prediction |
| Prediction of coiled coils (1) |
| Prediction of coiled coils (2) |
| ProtScale |
|
Protein interaction databases | |
| GRID |
| BIND |
| DIP |
| UniProt |
| Human Protein Reference Database |
| Munich Information Center for Protein Sequences (MIPS) |
| InParanoid Interlogs database |
|
Yeast resources | |
| Saccharomyces cerevisiae Genome Database |
| Yeast GFP subcellular localization database |
