Pages

Bioinformatics tools

Bioinformatics tools

Integrated prediction tools

MyHits server

BLAST searches

Nucleotide BLAST (BLASTN) at NCBI
Protein BLAST (BLASTP) at NCBI
Translated query against Protein BLAST (BLASTX) at NCBI

Signal sequence and topology prediction tools

– Visualization of proteoforms and interactive integration of annotated and predicted sequence features together with experimental proteomic evidence Protter data base
– Prediction of sorting signals PSORT
– Prediction of cleavable N-terminal signal sequences SignalIP Server
– Prediction of propeptide cleavage sites ProP
– Prediction of mitochondrial targeting sequences MITOPROT
Predotar
– Topology prediction programs OPM database
HMMTOP Server
TMHMM
TopPred
– Prediction of subcellular localization PSort
TargetP
LocTree
– Prediction of nuclear localization signals PredictNLS

Pattern and domain prediction

Prediction of protein domains, patterns and sites at InterProScan
Search for repeats in a protein sequence
De novo repeat prediction
Prediction of coiled coils (1)
Prediction of coiled coils (2)
ProtScale

Protein interaction databases

GRID
BIND
DIP
UniProt
Human Protein Reference Database
Munich Information Center for Protein Sequences (MIPS)
InParanoid Interlogs database

Yeast resources

Saccharomyces cerevisiae Genome Database
Yeast GFP subcellular localization database